caffe-安装anaconda后重新编译caffe报错-白红宇

caffe-安装anaconda后重新编译caffe报错

阅读量：4645 次

发布时间：2019-06-09

本文共 10929 字，大约阅读时间需要 36 分钟。

ks@ks-go:~/caffe-master$ make -j16CXX/LD -o .build_release/tools/convert_imageset.binCXX/LD -o .build_release/tools/net_speed_benchmark.binCXX/LD -o .build_release/tools/upgrade_net_proto_text.binCXX/LD -o .build_release/tools/upgrade_net_proto_binary.binCXX/LD -o .build_release/tools/test_net.binCXX/LD -o .build_release/tools/finetune_net.binCXX/LD -o .build_release/tools/train_net.binCXX/LD -o .build_release/tools/device_query.binCXX/LD -o .build_release/tools/upgrade_solver_proto_text.binCXX/LD -o .build_release/tools/caffe.binCXX/LD -o .build_release/tools/extract_features.binCXX/LD -o .build_release/tools/compute_image_mean.bin.build_release/tools/test_net.o：在函数‘boost::system::system_error::what() const’中：test_net.cpp:(.text._ZNK5boost6system12system_error4whatEv[_ZNK5boost6system12system_error4whatEv]+0x74)：对‘std::__cxx11::basic_string
     
      , std::allocator
      
        >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)’未定义的引用test_net.cpp:(.text._ZNK5boost6system12system_error4whatEv[_ZNK5boost6system12system_error4whatEv]+0xa1)：对‘std::__cxx11::basic_string
       
        , std::allocator
        
          >::_M_append(char const*, unsigned long)’未定义的引用test_net.cpp:(.text._ZNK5boost6system12system_error4whatEv[_ZNK5boost6system12system_error4whatEv]+0xe3)：对‘std::__cxx11::basic_string
         
          , std::allocator
          
            >::_M_append(char const*, unsigned long)’未定义的引用/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对��.build_release/tools/train_net.o：在函数‘boost::system::system_error::what() const’中：train_net.cpp:(.text._ZNK5boost6system12system_error4whatEv[_ZNK5boost6system12system_error4whatEv]+0x74)：对‘std::__cxx11::basic_string
           
            , std::allocator
            
              >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)’未定义的引用train_net.cpp:(.text._ZNK5boost6system12system_error4whatEv[_ZNK5boost6system12system_error4whatEv]+0xa1)：对‘std::__cxx11::basic_string
             
              , std::allocator
              
                >::_M_append(char const*, unsigned long)’未定义的引用train_net.cpp:(.text._ZNK5boost6system12system_error4whatEv[_ZNK5boost6system12system_error4whatEv]+0xe3)：对‘std::__cxx11::basic_string
               
                , std::allocator
                
                  >::_M_append(char const*, unsigned long)’未定义的引用/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string
                 
                  , std::allocator
                  
                    >::compare(std::__cxx11::basic_string
                   
                    , std::allocator
                    
                      > const&) const@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string
                     
                      , std::allocator
                      
                        >::_M_create(unsigned long&, unsigned long)@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string
                       
                        , std::allocator
                        
                          >::_M_replace_aux(unsigned long, unsigned long, unsigned long, char)@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string
                         
                          , std::allocator
                          
                            >::_M_append(char const*, unsigned long)@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string
                           
                            , std::allocator
                            
                              >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)@GLIBCXX_3.4.21’未定义的引用/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string
                             
                              , std::allocator
                              
                                >::_M_construct(unsigned long, char)@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：对‘vtable for std::__cxx11::basic_stringbuf
                               
                                , std::allocator
                                
                                  >@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string
                                 
                                  , std::allocator
                                  
                                    >::assign(char const*)@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string
                                   
                                    , std::allocator
                                    
                                      >::_M_assign(std::__cxx11::basic_string
                                     
                                      , std::allocator/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string
                                      
                                       , std::allocator
                                       
                                         >::compare(std::__cxx11::basic_string
                                        
                                         char>, std:> :allocator
                                         
                                           > const&) const@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string
                                          
                                           , std::allocator
                                           
                                             >::_M_create(unsigned long&, unsigned long)@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string
                                            
                                             , std::allocator
                                             
                                               >::_M_replace_aux(unsigned long, unsigned long, unsigned long, char)@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string
                                              
                                               , std::allocator
                                               
                                                 >::_M_append(char const*, unsigned long)@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string
                                                
                                                 , std::allocator
                                                 
                                                   >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)@GLIBCXX_3.4.21’未定义的引用/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string
                                                  
                                                   , std::allocator
                                                   
                                                     >::_M_construct(unsigned long, char)@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/�libglog.so：对‘vtable for std::__cxx11::basic_stringbuf
                                                    
                                                     , std::allocator
                                                     
                                                       >@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string
                                                      
                                                       , std::allocator
                                                       
                                                         >::assign(char const*)@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string
                                                        
                                                         , std::allocator
                                                         
                                                           >::_M_assign(std::__cxx11::basic_string
                                                          
                                                           , std::allocator
                                                           
                                                             > const&)@GLIBCXX_3.4.21’未定义的引用/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string
                                                            
                                                             , std::allocator
                                                             
                                                               >::_M_erase(unsigned long, unsigned long)@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：对‘vtable for std::__cxx11::basic_ostringstream
                                                              
                                                               , std::allocator
                                                               
                                                                 >@GLIBCXX_3.4.21’未定义的引用/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string
                                                                
                                                                 , std::allocator
                                                                 
                                                                   >::reserve(unsigned long)@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：collect2: error: ld returned 1 exit status对‘std::__cxx11::basic_string
                                                                  
                                                                   , std::allocator
                                                                   
                                                                     >::compare(char const*) const@GLIBCXX_3.4.21’未定义的引用collect2: error: ld returned 1 exit status/../x86_64-linux-gnu/libgflags.so：�对‘std::__cxx11::basic_string
                                                                    
                                                                     , std::allocator
                                                                     
                                                                       >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)’未定义的引用finetune_net.cpp:(.text._ZNK5boost6system12system_error4whatEv[_ZNK5boost6system12system_error4whatEv]+0xa1)：对‘std::__cxx11::basic_string
                                                                      
                                                                       , std::allocator
                                                                       
                                                                         >::_M_append(char const*, unsigned long)’未定义的引用finetune_net.cpp:(.text._ZNK5boost6system12system_error4whatEv[_ZNK5boost6system12system_error4whatEv]+0xe3)：对‘std::__cxx11::basic_string
                                                                        
                                                                         , std::allocator
                                                                         
                                                                           >::_M_append(char const*, unsigned long)’未定义的引用/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string
                                                                          
                                                                           , std::allocator
                                                                           
                                                                             >::compare(std::__cxx11::basic_string
                                                                            
                                                                             , std::allocator
                                                                             
                                                                               > const&) const@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string
                                                                              
                                                                               , std::allocator
                                                                               
                                                                                 >::_M_create(unsigned long&, unsigned long)@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string
                                                                                
                                                                                 , std::allocator
                                                                                 
                                                                                   >::_M_replace_aux(unsigned long, unsigned long, unsigned long, char)@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string
                                                                                  
                                                                                   , std::allocator
                                                                                   
                                                                                     >::_M_append(char const*, unsigned long)@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string
                                                                                    
                                                                                     , std::allocator
                                                                                     
                                                                                       >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)@GLIBCXX_3.4.21’未定义的引用/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string
                                                                                      
                                                                                       , std::allocator
                                                                                       
                                                                                         >::_M_construct(unsigned long, char)@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：对‘vtable for std::__cxx11::basic_stringbuf
                                                                                        
                                                                                         , std::allocator
                                                                                         
                                                                                           >@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string
                                                                                          
                                                                                           , std::allocator
                                                                                           
                                                                                             >::assign(char const*)@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string
                                                                                            
                                                                                             , std::allocator
                                                                                             
                                                                                               >::_M_assign(std::__cxx11::basic_string
                                                                                              
                                                                                               , std::allocator
                                                                                               
                                                                                                 > const&)@GLIBCXX_3.4.21’未定义的引用/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string
                                                                                                
                                                                                                 , std::allocator
                                                                                                 
                                                                                                   >::_M_erase(unsigned long, unsigned long)@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：对‘vtable for std::__cxx11::basic_ostringstream
                                                                                                  
                                                                                                   , std::allocator
                                                                                                   
                                                                                                     >@GLIBCXX_3.4.21’未定义的引用/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string
                                                                                                    
                                                                                                     , std::allocator
                                                                                                     
                                                                                                       >::reserve(unsigned long)@GLIBCXX_3.4.21’未定义的引用/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__throw_out_of_range_fmt(char const*, ...)@GLIBCXX_3.4.20’未定义的引用/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string
                                                                                                      
                                                                                                       , std::allocator
                                                                                                       
                                                                                                         >::rfind(char, unsigned long) const@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：对‘std::__cxx11::basic_stringbuf
                                                                                                        
                                                                                                         , std::allocator
                                                                                                         
                                                                                                           >::_M_sync(char*, unsigned long, unsigned long)@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string
                                                                                                          
                                                                                                           , std::allocator
                                                                                                           
                                                                                                             >::~basic_string()@GLIBCXX_3.4.21’未定义的引用/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string
                                                                                                            
                                                                                                             , std::allocator
                                                                                                             
                                                                                                               >::append(char const*)@GLIBCXX_3.4.21’未定义的引用/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string
                                                                                                              
                                                                                                               , std::allocator
                                                                                                               
                                                                                                                 >::find(char, unsigned long) const@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：对‘std::__cxx11::basic_ostringstream
                                                                                                                
                                                                                                                 , std::allocator
                                                                                                                 
                                                                                                                   >::~basic_ostringstream()@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：对‘VTT for std::__cxx11::basic_ostringstream
                                                                                                                  
                                                                                                                   , std::allocator
                                                                                                                   
                                                                                                                     >@GLIBCXX_3.4.21’未定义的引用/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so：对‘std::__cxx11::basic_string
                                                                                                                    
                                                                                                                     , std::allocator
                                                                                                                     
                                                                                                                       >::find(char const*, unsigned long, unsigned long) const@GLIBCXX_3.4.21’未定义的引用/usr/local/lib/libglog.so：对‘std::__cxx11::basic_string
                                                                                                                      
                                                                                                                       , std::allocator
                                                                                                                       
                                                                                                                         >::compare(char const*) const@GLIBCXX_3.4.21’未定义的引用collect2: error: ld returned 1 exit status。。。很长一串问题

对于这个问题找了N久都没有找到答案，在caffe的issue中看到有人有同样的问题，但并没有得到答案，后来在另一个问题中看到了一个方法，

cd caffecp Makefile.config.example Makefile.configand change setting in Makefile.configmkdir buildcd buildcmake .../configure (??not sure??)make all

执行一遍后发现有戏啊，可是又有一个新的关于opencv_imgcodecs的问题，同样在刚才的链接中的方法

add "opencv_imgcodecs" in Makefile.(LIBRARIES += glog gflags protobuf leveldb snappy \

lmdb boost_system hdf5_hl hdf5 m \

opencv_core opencv_highgui opencv_imgproc opencv_imgcodecs)

就是在makefile的“LIBRARIES +=”中添加一个“opencv_imgcodecs”,make clean，再make all这样刚才的问题就没有了

这样就可以了？？？结果又出了一个新的问题，/usr/lib/libopencv_highgui.so.2.4: undefined reference to ' 1>

网上说是opencv编译的问题，于是就重新编译opencv，这次编译cmake加上一个参数：

-D BUILD_TIFF=ON 于是又屁颠屁颠的开始编译了，这一次已经有了报错的心里准备了，果然新的问题来了，//usr/lib/x86_64-linux-gnu/libsoxr.so.0:对‘GOMP_parallel@GOMP_4.0’未定义的， 对于这个问题我以为百度一下就能解决，可事实证明我还是too young too simple，这个问题找了很久都没找到答案，但是有个发现，就是稍微沾边的解释里都有anaconda，突然醒悟，我现在遭的罪不都是安装了anaconda后造成的么，搞不好是anaconda与系统兼容造成的，于是我决定anaconda 零时屏蔽了再来编译opencv试试，屏蔽的具体方法是在

sudo gedit ~/.bashrc在下面这两句话前面加上“#”注释掉#export PATH="/home/ks/anaconda2/bin:$PATH"#export LD_LIBRARY_PATH="/home/ks/anaconda2/lib:$LD_LIBRARY_PATH"

然后再次来编译opencv，奇迹出现啦，经过漫长的等待，opencv终于编译完成啦，现在回头想想，caffe之所以编译报那么多错肯定也是由anaconda造成的,但是屏蔽anaconda后用以前的方法直接编译caffe还是会报很多错，不过用上面提到的cmake的方式进行编译就顺利的完成了。

总结一下经验就是：可能是anaconda自带的编译环境的版本有问题，所以今后就算想用anaconda，也要先把caffe和opencv编译好后再装anaconda！

转载于:https://www.cnblogs.com/kingstrong/p/6015157.html

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